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Yao, Xin-Qiu, Momin, Mohamed, Hamelberg, Donald (2018) Elucidating Allosteric Communications in Proteins with Difference Contact Network Analysis. Journal of Chemical Information and Modeling, 58 (7) 1325-1330 doi:10.1021/acs.jcim.8b00250

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Reference TypeJournal (article/letter/editorial)
TitleElucidating Allosteric Communications in Proteins with Difference Contact Network Analysis
JournalJournal of Chemical Information and Modeling
AuthorsYao, Xin-QiuAuthor
Momin, MohamedAuthor
Hamelberg, DonaldAuthor
Year2018 (July 23)Volume58
Issue7
PublisherAmerican Chemical Society (ACS)
DOIdoi:10.1021/acs.jcim.8b00250Search in ResearchGate
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Mindat Ref. ID14613265Long-form Identifiermindat:1:5:14613265:2
GUID0
Full ReferenceYao, Xin-Qiu, Momin, Mohamed, Hamelberg, Donald (2018) Elucidating Allosteric Communications in Proteins with Difference Contact Network Analysis. Journal of Chemical Information and Modeling, 58 (7) 1325-1330 doi:10.1021/acs.jcim.8b00250
Plain TextYao, Xin-Qiu, Momin, Mohamed, Hamelberg, Donald (2018) Elucidating Allosteric Communications in Proteins with Difference Contact Network Analysis. Journal of Chemical Information and Modeling, 58 (7) 1325-1330 doi:10.1021/acs.jcim.8b00250
In(2018, July) Journal of Chemical Information and Modeling Vol. 58 (7) American Chemical Society (ACS)

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Yao, Xin-Qiu, Momin, Mohamed, Hamelberg, Donald (2019) Establishing a Framework of Using Residue–Residue Interactions in Protein Difference Network Analysis. Journal of Chemical Information and Modeling, 59 (7) 3222-3228 doi:10.1021/acs.jcim.9b00320
Momin, Mohamed, Yao, Xin-Qiu, Thor, Waygen, Hamelberg, Donald (2018) Substrate Sequence Determines Catalytic Activities, Domain-Binding Preferences, and Allosteric Mechanisms in Pin1. The Journal of Physical Chemistry B, 122 (25). 6521-6527 doi:10.1021/acs.jpcb.8b03819
Souffrant, Michael, Yao, Xin-Qiu, Hamelberg, Donald (2023) Evolving Mutational Buildup in HIV-1 Protease Shifts Conformational Dynamics to Gain Drug Resistance. Journal of Chemical Information and Modeling, 63 (12) American Chemical Society (ACS) 3892-3902 doi:10.1021/acs.jcim.3c00535
Yao, Xin-Qiu, Hamelberg, Donald (2022) From Distinct to Differential Conformational Dynamics to Map Allosteric Communication Pathways in Proteins. The Journal of Physical Chemistry B, 126 (14) 2612-2620 doi:10.1021/acs.jpcb.2c00199
Momin, Mohamed, Xin, Yao, Hamelberg, Donald (2017) Allosteric Fine-Tuning of the Binding Pocket Dynamics in the ITK SH2 Domain by a Distal Molecular Switch: An Atomistic Perspective. The Journal of Physical Chemistry B, 121 (25). 6131-6138 doi:10.1021/acs.jpcb.7b03470
Rodriguez-Bussey, Isela, Yao, Xin-Qiu, Shouaib, Abdullah Danish, Lopez, Jonathan, Hamelberg, Donald (2018) Decoding Allosteric Communication Pathways in Cyclophilin A with a Comparative Analysis of Perturbed Conformational Ensembles. The Journal of Physical Chemistry B, 122 (25). 6528-6535 doi:10.1021/acs.jpcb.8b03824
Barman, Arghya, Smitherman, Crystal, Souffrant, Michael, Gadda, Giovanni, Hamelberg, Donald (2016) Conserved Hydration Sites in Pin1 Reveal a Distinctive Water Recognition Motif in Proteins. Journal of Chemical Information and Modeling, 56 (1) 139-147 doi:10.1021/acs.jcim.5b00560
Treptow, Werner (2023) Allosteric Modulation of Membrane Proteins by Small Low-Affinity Ligands. Journal of Chemical Information and Modeling, 63 (7) 2047-2057 doi:10.1021/acs.jcim.2c01542
Stetz, Gabrielle, Verkhivker, Gennady M. (2018) Functional Role and Hierarchy of the Intermolecular Interactions in Binding of Protein Kinase Clients to the Hsp90–Cdc37 Chaperone: Structure-Based Network Modeling of Allosteric Regulation. Journal of Chemical Information and Modeling, 58 (2) 405-421 doi:10.1021/acs.jcim.7b00638
Penkler, David L., Atilgan, Canan, Tastan Bishop, Özlem (2018) Allosteric Modulation of Human Hsp90α Conformational Dynamics. Journal of Chemical Information and Modeling, 58 (2) 383-404 doi:10.1021/acs.jcim.7b00630
Tse, Amanda, Verkhivker, Gennady M. (2015) Molecular Dynamics Simulations and Structural Network Analysis of c-Abl and c-Src Kinase Core Proteins: Capturing Allosteric Mechanisms and Communication Pathways from Residue Centrality. Journal of Chemical Information and Modeling, 55 (8) 1645-1662 doi:10.1021/acs.jcim.5b00240
 
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