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Ali, Zakir, Goyal, Ambika, Jhunjhunwala, Ayush, Mitra, Abhijit, Trant, John F., Sharma, Purshotam (2023) Structural and Energetic Features of Base–Base Stacking Contacts in RNA. Journal of Chemical Information and Modeling, 63 (2) 655-669 doi:10.1021/acs.jcim.2c01116

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Reference TypeJournal (article/letter/editorial)
TitleStructural and Energetic Features of Base–Base Stacking Contacts in RNA
JournalJournal of Chemical Information and Modeling
AuthorsAli, ZakirAuthor
Goyal, AmbikaAuthor
Jhunjhunwala, AyushAuthor
Mitra, AbhijitAuthor
Trant, John F.Author
Sharma, PurshotamAuthor
Year2023 (January 23)Volume63
Issue2
PublisherAmerican Chemical Society (ACS)
DOIdoi:10.1021/acs.jcim.2c01116Search in ResearchGate
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Mindat Ref. ID15679536Long-form Identifiermindat:1:5:15679536:6
GUID0
Full ReferenceAli, Zakir, Goyal, Ambika, Jhunjhunwala, Ayush, Mitra, Abhijit, Trant, John F., Sharma, Purshotam (2023) Structural and Energetic Features of Base–Base Stacking Contacts in RNA. Journal of Chemical Information and Modeling, 63 (2) 655-669 doi:10.1021/acs.jcim.2c01116
Plain TextAli, Zakir, Goyal, Ambika, Jhunjhunwala, Ayush, Mitra, Abhijit, Trant, John F., Sharma, Purshotam (2023) Structural and Energetic Features of Base–Base Stacking Contacts in RNA. Journal of Chemical Information and Modeling, 63 (2) 655-669 doi:10.1021/acs.jcim.2c01116
In(2023, January) Journal of Chemical Information and Modeling Vol. 63 (2) American Chemical Society (ACS)

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Ali, Zakir, Kaur, Sarabjeet, Kukhta, Teagan, Abu-Saleh, Abd Al-Aziz A., Jhunjhunwala, Ayush, Mitra, Abhijit, Trant, John F., Sharma, Purshotam (2023) Structural Mapping of the Base Stacks Containing Post-transcriptionally Modified Bases in RNA. The Journal of Physical Chemistry B, 127 (27) American Chemical Society (ACS) 6049-6060 doi:10.1021/acs.jpcb.3c02268
Jhunjhunwala, Ayush, Ali, Zakir, Bhattacharya, Sohini, Halder, Antarip, Mitra, Abhijit, Sharma, Purshotam (2021) On the Nature of Nucleobase Stacking in RNA: A Comprehensive Survey of Its Structural Variability and a Systematic Classification of Associated Interactions. Journal of Chemical Information and Modeling, 61 (3) 1470-1480 doi:10.1021/acs.jcim.0c01225
Sharma, Purshotam, Šponer, Jiří, Sharma, Sitansh, Bhattacharyya, Dhananjay, Mitra, Abhijit (2010) On the Role of cis Hoogsteen:Sugar Edge Family of Base Pairs in Platforms and Triplets—Quantum Chemical Insights into RNA Structural Biology. The Journal of Physical Chemistry B, 114 (31). 10234 doi:10.1021/jp106172b
Chawla, Mohit, Sharma, Purshotam, Halder, Sukanya, Bhattacharyya, Dhananjay, Mitra, Abhijit (2011) Protonation of Base Pairs in RNA: Context Analysis and Quantum Chemical Investigations of Their Geometries and Stabilities. The Journal of Physical Chemistry B, 115 (6). 1469-1484 doi:10.1021/jp106848h
Sharma, Purshotam, Šponer, Judit E., Šponer, Jiří, Sharma, Sitansh, Bhattacharyya, Dhananjay, Mitra, Abhijit (2010) On the Role of the cis Hoogsteen:Sugar-Edge Family of Base Pairs in Platforms and Triplets—Quantum Chemical Insights into RNA Structural Biology. The Journal of Physical Chemistry B, 114 (9). 3307-3320 doi:10.1021/jp910226e
Mládek, Arnošt, Sharma, Purshotam, Mitra, Abhijit, Bhattacharyya, Dhananjay, Šponer, Jiří, Šponer, Judit E. (2009) Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies, and Stabilities from Quantum Chemical Calculations. The Journal of Physical Chemistry B, 113 (6). 1743-1755 doi:10.1021/jp808357m
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Amarante, Tauanne D., Weber, Gerald (2016) Evaluating Hydrogen Bonds and Base Stacking of Single, Tandem and Terminal GU Mismatches in RNA with a Mesoscopic Model. Journal of Chemical Information and Modeling, 56 (1) 101-109 doi:10.1021/acs.jcim.5b00571
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