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Sanchez, Ambrocio, Ortega, Pedro, Sakhtemani, Ramin, Manjunath, Lavanya, Oh, Sunwoo, Bournique, Elodie, Becker, Alexandrea, Kim, Kyumin, Durfee, Cameron, Temiz, Nuri Alpay, Chen, Xiaojiang S., Harris, Reuben S., Lawrence, Michael S., Buisson, Rémi (2024) Mesoscale DNA features impact APOBEC3A and APOBEC3B deaminase activity and shape tumor mutational landscapes. Nature Communications, 15 (1) doi:10.1038/s41467-024-45909-5

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Reference TypeJournal (article/letter/editorial)
TitleMesoscale DNA features impact APOBEC3A and APOBEC3B deaminase activity and shape tumor mutational landscapes
JournalNature Communications
AuthorsSanchez, AmbrocioAuthor
Ortega, PedroAuthor
Sakhtemani, RaminAuthor
Manjunath, LavanyaAuthor
Oh, SunwooAuthor
Bournique, ElodieAuthor
Becker, AlexandreaAuthor
Kim, KyuminAuthor
Durfee, CameronAuthor
Temiz, Nuri AlpayAuthor
Chen, Xiaojiang S.Author
Harris, Reuben S.Author
Lawrence, Michael S.Author
Buisson, RémiAuthor
Year2024 (March 18)Volume15
Issue1
PublisherSpringer Science and Business Media LLC
DOIdoi:10.1038/s41467-024-45909-5Search in ResearchGate
Generate Citation Formats
Mindat Ref. ID17231320Long-form Identifiermindat:1:5:17231320:9
GUID0
Full ReferenceSanchez, Ambrocio, Ortega, Pedro, Sakhtemani, Ramin, Manjunath, Lavanya, Oh, Sunwoo, Bournique, Elodie, Becker, Alexandrea, Kim, Kyumin, Durfee, Cameron, Temiz, Nuri Alpay, Chen, Xiaojiang S., Harris, Reuben S., Lawrence, Michael S., Buisson, Rémi (2024) Mesoscale DNA features impact APOBEC3A and APOBEC3B deaminase activity and shape tumor mutational landscapes. Nature Communications, 15 (1) doi:10.1038/s41467-024-45909-5
Plain TextSanchez, Ambrocio, Ortega, Pedro, Sakhtemani, Ramin, Manjunath, Lavanya, Oh, Sunwoo, Bournique, Elodie, Becker, Alexandrea, Kim, Kyumin, Durfee, Cameron, Temiz, Nuri Alpay, Chen, Xiaojiang S., Harris, Reuben S., Lawrence, Michael S., Buisson, Rémi (2024) Mesoscale DNA features impact APOBEC3A and APOBEC3B deaminase activity and shape tumor mutational landscapes. Nature Communications, 15 (1) doi:10.1038/s41467-024-45909-5
In(2024, January) Nature Communications Vol. 15 (1) Springer Science and Business Media LLC

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Manjunath, Lavanya, Oh, Sunwoo, Ortega, Pedro, Bouin, Alexis, Bournique, Elodie, Sanchez, Ambrocio, Martensen, Pia Møller, Auerbach, Ashley A., Becker, Jordan T., Seldin, Marcus, Harris, Reuben S., Semler, Bert L., Buisson, Rémi (2023) APOBEC3B drives PKR-mediated translation shutdown and protects stress granules in response to viral infection. Nature Communications, 14 (1) doi:10.1038/s41467-023-36445-9
Langenbucher, Adam, Bowen, Danae, Sakhtemani, Ramin, Bournique, Elodie, Wise, Jillian F., Zou, Lee, Bhagwat, Ashok S., Buisson, Rémi, Lawrence, Michael S. (2021) An extended APOBEC3A mutation signature in cancer. Nature Communications, 12 (1) doi:10.1038/s41467-021-21891-0
Oh, Sunwoo, Bournique, Elodie, Bowen, Danae, Jalili, Pégah, Sanchez, Ambrocio, Ward, Ian, Dananberg, Alexandra, Manjunath, Lavanya, Tran, Genevieve P., Semler, Bert L., Maciejowski, John, Seldin, Marcus, Buisson, Rémi (2021) Genotoxic stress and viral infection induce transient expression of APOBEC3A and pro-inflammatory genes through two distinct pathways. Nature Communications, 12 (1) doi:10.1038/s41467-021-25203-4
Butt, Yasha, Sakhtemani, Ramin, Mohamad-Ramshan, Rukshana, Lawrence, Michael S., Bhagwat, Ashok S. (2024) Distinguishing preferences of human APOBEC3A and APOBEC3B for cytosines in hairpin loops, and reflection of these preferences in APOBEC-signature cancer genome mutations. Nature Communications, 15 (1) doi:10.1038/s41467-024-46231-w
Ortega, Pedro; Bournique, Elodie; Li, Junyi; Sanchez, Ambrocio; Santiago, Gisselle; Harris, Brooke R.; Striepen, Josefine; Maciejowski, John; Green, Abby M.; Buisson, Rémi (2025) Mechanism of DNA replication fork breakage and PARP1 hyperactivation during replication catastrophe. Science Advances, 11 (16). doi:10.1126/sciadv.adu0437
Yang, Hanjing, Pacheco, Josue, Kim, Kyumin, Bokani, Ayub, Ito, Fumiaki, Ebrahimi, Diako, Chen, Xiaojiang S. (2024) Molecular mechanism for regulating APOBEC3G DNA editing function by the non-catalytic domain. Nature Communications, 15 (1). doi:10.1038/s41467-024-52671-1
Naumann, Jordan A., Argyris, Prokopios P., Carpenter, Michael A., Gupta, Harshita B., Chen, Yanjun, Temiz, Nuri A., Zhou, Yufan, Durfee, Cameron, Proehl, Joshua, Koniar, Brenda L., Conticello, Silvestro G., Largaespada, David A., Brown, William L., Aihara, Hideki, Vogel, Rachel I., Harris, Reuben S. (2023) DNA Deamination Is Required for Human APOBEC3A-Driven Hepatocellular Carcinoma In Vivo. International Journal of Molecular Sciences, 24 (11) 9305 doi:10.3390/ijms24119305
Buisson, Rémi, Langenbucher, Adam, Bowen, Danae, Kwan, Eugene E., Benes, Cyril H., Zou, Lee, Lawrence, Michael S. (2019) Passenger hotspot mutations in cancer driven by APOBEC3A and mesoscale genomic features. Science, 364 (6447). doi:10.1126/science.aaw2872
Starrett, Gabriel J., Luengas, Elizabeth M., McCann, Jennifer L., Ebrahimi, Diako, Temiz, Nuri A., Love, Robin P., Feng, Yuqing, Adolph, Madison B., Chelico, Linda, Law, Emily K., Carpenter, Michael A., Harris, Reuben S (2016) The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis. Nature Communications, 7. doi:10.1038/ncomms12918
Shi, Ke, Demir, Özlem, Carpenter, Michael A., Wagner, Jeff, Kurahashi, Kayo, Harris, Reuben S., Amaro, Rommie E., Aihara, Hideki (2017) Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B. Scientific Reports, 7. doi:10.1038/s41598-017-17694-3
Yang, Hanjing, Kim, Kyumin, Li, Shuxing, Pacheco, Josue, Chen, Xiaojiang S. (2022) Structural basis of sequence-specific RNA recognition by the antiviral factor APOBEC3G. Nature Communications, 13 (1) doi:10.1038/s41467-022-35201-9
 
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