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Phalempin, Maxime; Krämer, Lars; Geers-Lucas, Maik; Isensee, Fabian; Schlüter, Steffen (2025) Deep learning segmentation of soil constituents in 3D X-ray CT images. Geoderma, 458. doi:10.1016/j.geoderma.2025.117321

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Reference TypeJournal (article/letter/editorial)
TitleDeep learning segmentation of soil constituents in 3D X-ray CT images
JournalGeoderma
AuthorsPhalempin, MaximeAuthor
Krämer, LarsAuthor
Geers-Lucas, MaikAuthor
Isensee, FabianAuthor
Schlüter, SteffenAuthor
Year2025 (June)Volume458
PublisherElsevier BV
DOIdoi:10.1016/j.geoderma.2025.117321Search in ResearchGate
Generate Citation Formats
Mindat Ref. ID18413960Long-form Identifiermindat:1:5:18413960:6
GUID0
Full ReferencePhalempin, Maxime; Krämer, Lars; Geers-Lucas, Maik; Isensee, Fabian; Schlüter, Steffen (2025) Deep learning segmentation of soil constituents in 3D X-ray CT images. Geoderma, 458. doi:10.1016/j.geoderma.2025.117321
Plain TextPhalempin, Maxime; Krämer, Lars; Geers-Lucas, Maik; Isensee, Fabian; Schlüter, Steffen (2025) Deep learning segmentation of soil constituents in 3D X-ray CT images. Geoderma, 458. doi:10.1016/j.geoderma.2025.117321
In(2025) Geoderma Vol. 458. Elsevier BV

References Listed

These are the references the publisher has listed as being connected to the article. Please check the article itself for the full list of references which may differ. Not all references are currently linkable within the Digital Library.

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Nitzbon, Jan, Gadylyaev, Damir, Schlüter, Steffen, Köhne, John Maximilian, Grosse, Guido, Boike, Julia (2022) Brief communication: Unravelling the composition and microstructure of a permafrost core using X-ray computed tomography. The Cryosphere, 16 (9) 3507-3515 doi:10.5194/tc-16-3507-2022
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Phalempin, Maxime; Jentzsch, Nils; Köhne, John Maximilian; Schreiter, Susanne; Gründling, Ralf; Vetterlein, Doris; Schlüter, Steffen (2025) Soil structure development in a five-year chronosequence of maize cropping on two contrasting soil textures. Soil and Tillage Research, 251. doi:10.1016/j.still.2025.106561
Phalempin, Maxime, Landl, Magdalena, Wu, Gi-Mick, Schnepf, Andrea, Vetterlein, Doris, Schlüter, Steffen (2022) Maize root-induced biopores do not influence root growth of subsequently grown maize plants in well aerated, fertilized and repacked soil columns. Soil and Tillage Research, 221. 105398 doi:10.1016/j.still.2022.105398
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Rooney, Erin C., Bailey, Vanessa L., Patel, Kaizad F., Dragila, Maria, Battu, Anil K., Buchko, Alexander C., Gallo, Adrian C., Hatten, Jeffery, Possinger, Angela R., Qafoku, Odeta, Reno, Loren.R., SanClements, Michael, Varga, Tamas, Lybrand, Rebecca A. (2022) Soil pore network response to freeze-thaw cycles in permafrost aggregates. Geoderma, 411. 115674pp. doi:10.1016/j.geoderma.2021.115674
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Schindelin, Johannes, Arganda-Carreras, Ignacio, Frise, Erwin, Kaynig, Verena, Longair, Mark, Pietzsch, Tobias, Preibisch, Stephan, Rueden, Curtis, Saalfeld, Stephan, Schmid, Benjamin, Tinevez, Jean-Yves, White, Daniel James, Hartenstein, Volker, Eliceiri, Kevin, Tomancak, Pavel, Cardona, Albert (2012) Fiji: an open-source platform for biological-image analysis. Nature Methods, 9 (7). 676-682 doi:10.1038/nmeth.2019
Schlüter, Steffen, Albrecht, Lukas, Schwärzel, Kai, Kreiselmeier, Janis (2020) Long-term effects of conventional tillage and no-tillage on saturated and near-saturated hydraulic conductivity – Can their prediction be improved by pore metrics obtained with X-ray CT?. Geoderma, 361. 114082pp. doi:10.1016/j.geoderma.2019.114082
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Teramoto (2024) Plant Methods Convolutional neural networks combined with conventional filtering to semantically segment plant roots in rapidly scanned X-ray computed tomography volumes with high noise levels 20, 73
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See Also

These are possibly similar items as determined by title/reference text matching only.

Phalempin, Maxime, Rosskopf, Ulla, Schlüter, Steffen, Vetterlein, Doris, Peth, Stephan (2023) Can we use X-ray CT to generate 3D penetration resistance data?. Geoderma, 439. 116700 doi:10.1016/j.geoderma.2023.116700
Schlüter, Steffen, Lucas, Maik, Phalempin, Maxime, Knecht, Loreena, Langehenke, Felix, Deubel, Annette, Reddersen, Björn, Rusch, Constanze, Rücknagel, Jan (2023) Organic farming systems affect carbon stocks but not soil structure and associated physical properties in a long-term farming trial on Chernozem. Geoderma, 438. Elsevier BV. 116619 doi:10.1016/j.geoderma.2023.116619
Lucas, Maik, Schlüter, Steffen, Vogel, Hans-Jörg, Vetterlein, Doris (2019) Soil structure formation along an agricultural chronosequence. Geoderma, 350. 61-72 doi:10.1016/j.geoderma.2019.04.041
Schlüter, Steffen; Wu, Mengqi; Phalempin, Maxime; Philipp, Lena; Blagodatskaya, Evgenia; Reitz, Thomas; Simon, Carsten; Lechtenfeld, Oliver; Vogel, Hans-Jörg; Schädler, Martin; et al. (2025) Divergence in physical, chemical, and biological soil properties caused by different long-term bare fallow management and natural succession. Geoderma, 459. doi:10.1016/j.geoderma.2025.117361
Lucas, Maik, Vetterlein, Doris, Vogel, Hans‐Jörg, Schlüter, Steffen (2021) Revealing pore connectivity across scales and resolutions with X‐ray CT. European Journal of Soil Science, 72 (2) 546-560 doi:10.1111/ejss.12961
Munkholm, Lars J., Heck, Richard J., Deen, Bill (2012) Soil pore characteristics assessed from X-ray micro-CT derived images and correlations to soil friability. Geoderma, 181. 22-29 doi:10.1016/j.geoderma.2012.02.024
Phalempin, Maxime; Jentzsch, Nils; Köhne, John Maximilian; Schreiter, Susanne; Gründling, Ralf; Vetterlein, Doris; Schlüter, Steffen (2025) Soil structure development in a five-year chronosequence of maize cropping on two contrasting soil textures. Soil and Tillage Research, 251. doi:10.1016/j.still.2025.106561
Lippold, Eva, Kleinau, Philip, Blaser, Sebastian R. G. A., Schlüter, Steffen, Phalempin, Maxime, Vetterlein, Doris (2021) In soil measurement of radiation dose caused by X‐ray computed tomography. Journal of Plant Nutrition and Soil Science, 184 (3) 343-345 doi:10.1002/jpln.202000276
Prifling, Benedikt; Weber, Matthias; Rötzer, Maximilian; Ray, Nadja; Prechtel, Alexander; Phalempin, Maxime; Schlüter, Steffen; Vetterlein, Doris; Schmidt, Volker (2025) Correlating pore space morphology with numerically computed soil gas diffusion for structured loam and sand, including stochastic 3D microstructure modeling. Scientific Reports, 15 (1). doi:10.1038/s41598-025-05825-0
Schlüter, Steffen, Weller, Ulrich, Vogel, Hans-Jörg (2010) Segmentation of X-ray microtomography images of soil using gradient masks. Computers & Geosciences, 36 (10) 1246-1251 doi:10.1016/j.cageo.2010.02.007
Garbout, Amin, Munkholm, Lars J., Hansen, Søren B. (2013) Temporal dynamics for soil aggregates determined using X-ray CT scanning. Geoderma, 204. 15-22 doi:10.1016/j.geoderma.2013.04.004
 
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