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Ovchinnikov, Victor, Karplus, Martin (2014) Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string method. The Journal of Chemical Physics, 140 (17). 175103pp. doi:10.1063/1.4871685

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Reference TypeJournal (article/letter/editorial)
TitleInvestigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string method
JournalThe Journal of Chemical Physics
AuthorsOvchinnikov, VictorAuthor
Karplus, MartinAuthor
Year2014 (May 7)Volume140
Issue17
PublisherAIP Publishing
DOIdoi:10.1063/1.4871685Search in ResearchGate
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Mindat Ref. ID2367749Long-form Identifiermindat:1:5:2367749:8
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Full ReferenceOvchinnikov, Victor, Karplus, Martin (2014) Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string method. The Journal of Chemical Physics, 140 (17). 175103pp. doi:10.1063/1.4871685
Plain TextOvchinnikov, Victor, Karplus, Martin (2014) Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string method. The Journal of Chemical Physics, 140 (17). 175103pp. doi:10.1063/1.4871685
In(2014, May) The Journal of Chemical Physics Vol. 140 (17) AIP Publishing

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Ovchinnikov, Victor, Conti, Simone, Karplus, Martin (2020) A restrained locally enhanced sampling method (RLES) for finding free energy minima in complex systems. The Journal of Chemical Physics, 153 (12) 121103pp. doi:10.1063/5.0018026
Ren, Weiqing, Vanden-Eijnden, Eric, Maragakis, Paul, E, Weinan (2005) Transition pathways in complex systems: Application of the finite-temperature string method to the alanine dipeptide. The Journal of Chemical Physics, 123 (13). 134109pp. doi:10.1063/1.2013256
Kalgin, Igor V., Chekmarev, Sergei F., Karplus, Martin (2014) First Passage Analysis of the Folding of a β-Sheet Miniprotein: Is it More Realistic Than the Standard Equilibrium Approach?. The Journal of Physical Chemistry B, 118 (16). 4287-4299 doi:10.1021/jp412729r
Krivov, Sergei V., Muff, Stefanie, Caflisch, Amedeo, Karplus, Martin (2008) One-Dimensional Barrier-Preserving Free-Energy Projections of a β-sheet Miniprotein: New Insights into the Folding Process. The Journal of Physical Chemistry B, 112 (29). 8701-8714 doi:10.1021/jp711864r
Kalgin, Igor V., Caflisch, Amedeo, Chekmarev, Sergei F., Karplus, Martin (2013) New Insights into the Folding of a β-Sheet Miniprotein in a Reduced Space of Collective Hydrogen Bond Variables: Application to a Hydrodynamic Analysis of the Folding Flow. The Journal of Physical Chemistry B, 117 (20). 6092-6105 doi:10.1021/jp401742y
Zhang, Jiarui; Douglas, Jack F.; Zhang, Hao (2025) String-like collective motion mediates the martensitic α–β transition in titanium. The Journal of Chemical Physics, 163 (4). doi:10.1063/5.0280698
Ovchinnikov, Victor, Cecchini, Marco, Karplus, Martin (2013) A Simplified Confinement Method for Calculating Absolute Free Energies and Free Energy and Entropy Differences. The Journal of Physical Chemistry B, 117 (3). 750-762 doi:10.1021/jp3080578
Adrian, Frank J., Karplus, Martin (1964) β‐Proton Hyperfine Splittings in the Vinyl Radical. The Journal of Chemical Physics, 41 (1) 56-60 doi:10.1063/1.1725648
Ovchinnikov, Victor, Karplus, Martin (2023) Free Energy Simulations of Receptor-Binding Domain Opening of the SARS-CoV-2 Spike Indicate a Barrierless Transition with Slow Conformational Motions. The Journal of Physical Chemistry B, 127 (40) 8565-8575 doi:10.1021/acs.jpcb.3c05236
Zhang, Yanan, Ren, Weiqing (2014) Numerical study of the effects of surface topography and chemistry on the wetting transition using the string method. The Journal of Chemical Physics, 141 (24). 244705pp. doi:10.1063/1.4904947
 
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