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Kamiya, Narutoshi, Higo, Junichi (2001) Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules. Journal of Computational Chemistry, 22 (10). 1098-1106 doi:10.1002/jcc.1069

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Reference TypeJournal (article/letter/editorial)
TitleRepeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules
JournalJournal of Computational Chemistry
AuthorsKamiya, NarutoshiAuthor
Higo, JunichiAuthor
Year2001 (July 30)Volume22
Issue10
PublisherWiley
DOIdoi:10.1002/jcc.1069Search in ResearchGate
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Mindat Ref. ID3147461Long-form Identifiermindat:1:5:3147461:0
GUID0
Full ReferenceKamiya, Narutoshi, Higo, Junichi (2001) Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules. Journal of Computational Chemistry, 22 (10). 1098-1106 doi:10.1002/jcc.1069
Plain TextKamiya, Narutoshi, Higo, Junichi (2001) Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules. Journal of Computational Chemistry, 22 (10). 1098-1106 doi:10.1002/jcc.1069
In(2001, July) Journal of Computational Chemistry Vol. 22 (10) Wiley

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Higo, Junichi, Kamiya, Narutoshi, Sugihara, Takanori, Yonezawa, Yasushige, Nakamura, Haruki (2009) Verifying trivial parallelization of multicanonical molecular dynamics for conformational sampling of a polypeptide in explicit water. Chemical Physics Letters, 473. 326-329 doi:10.1016/j.cplett.2009.03.077
Mitomo, Daisuke, Watanabe, Yukihisa S., Kamiya, Narutoshi, Higo, Junichi (2006) Explicit and GB/SA solvents: Each with two different force fields in multicanonical conformational sampling of a 25-residue polypeptide. Chemical Physics Letters, 427. 399-403 doi:10.1016/j.cplett.2006.06.116
Kamiya, Narutoshi, Watanabe, Yukihisa S., Ono, Satoshi, Higo, Junichi (2005) AMBER-based hybrid force field for conformational sampling of polypeptides. Chemical Physics Letters, 401. 312-317 doi:10.1016/j.cplett.2004.11.070
Ikebe, Jinzen, Umezawa, Koji, Kamiya, Narutoshi, Sugihara, Takanori, Yonezawa, Yasushige, Takano, Yu, Nakamura, Haruki, Higo, Junichi (2011) Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. Journal of Computational Chemistry, 32 (7). 1286-1297 doi:10.1002/jcc.21710
Hayami, Tomonori, Kasahara, Kota, Nakamura, Haruki, Higo, Junichi (2018) Molecular dynamics coupled with a virtual system for effective conformational sampling. Journal of Computational Chemistry, 39 (19). 1291-1299 doi:10.1002/jcc.25196
Yagisawa, Ryosuke, Kamiya, Narutoshi, Ikebe, Jinzen, Umezawa, Koji, Higo, Junichi (2008) Structure dependency of a 24-residue peptide humanin on solvent and preferential solvation by trifluoroethanol studied by multicanonical sampling. Chemical Physics Letters, 455. 293-296 doi:10.1016/j.cplett.2008.02.109
Ikebe, Jinzen, Kamiya, Narutoshi, Shindo, Heisaburo, Nakamura, Haruki, Higo, Junichi (2007) Conformational sampling of a 40-residue protein consisting of α and β secondary-structure elements in explicit solvent. Chemical Physics Letters, 443. 364-368 doi:10.1016/j.cplett.2007.06.102
Higo, Junichi, Kawabata, Takeshi, Kusaka, Ayumi, Kasahara, Kota, Kamiya, Narutoshi, Fukuda, Ikuo, Mori, Kentaro, Hata, Yutaka, Fukunishi, Yoshifumi, Nakamura, Haruki (2020) Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. Journal of Chemical Information and Modeling, 60 (10) 4867-4880 doi:10.1021/acs.jcim.0c00551
Zhu, Fangqiang, Agrafiotis, Dimitris K. (2007) Self-organizing superimposition algorithm for conformational sampling. Journal of Computational Chemistry, 28 (7). 1234-1239 doi:10.1002/jcc.20622
Higo, Junichi, Nakajima, Nobuyuki, Shirai, Hiroki, Kidera, Akinori, Nakamura, Haruki (1997) Two-component multicanonical Monte Carlo method for effective conformation sampling. Journal of Computational Chemistry, 18 (16). 2086-2092 doi:10.1002/(sici)1096-987x(199712)18:16<2086::aid-jcc12>3.0.co;2-m
Crippen, Gordon M., Smellie, Andrew S., Richardson, Wendy W. (1992) Conformational sampling by a general linearized embedding algorithm. Journal of Computational Chemistry, 13 (10). 1262-1274 doi:10.1002/jcc.540131010
 
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