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Kasavajhala, Koushik, Bikkina, Swetha, Patil, Indrajit, MacKerell, Alexander D., Priyakumar, U. Deva (2015) Dispersion Interactions between Urea and Nucleobases Contribute to the Destabilization of RNA by Urea in Aqueous Solution. The Journal of Physical Chemistry B, 119 (9). 3755-3761 doi:10.1021/jp512414f

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Reference TypeJournal (article/letter/editorial)
TitleDispersion Interactions between Urea and Nucleobases Contribute to the Destabilization of RNA by Urea in Aqueous Solution
JournalThe Journal of Physical Chemistry B
AuthorsKasavajhala, KoushikAuthor
Bikkina, SwethaAuthor
Patil, IndrajitAuthor
MacKerell, Alexander D.Author
Priyakumar, U. DevaAuthor
Year2015 (March 5)Volume119
Issue9
PublisherAmerican Chemical Society (ACS)
DOIdoi:10.1021/jp512414fSearch in ResearchGate
Generate Citation Formats
Mindat Ref. ID3886183Long-form Identifiermindat:1:5:3886183:3
GUID0
Full ReferenceKasavajhala, Koushik, Bikkina, Swetha, Patil, Indrajit, MacKerell, Alexander D., Priyakumar, U. Deva (2015) Dispersion Interactions between Urea and Nucleobases Contribute to the Destabilization of RNA by Urea in Aqueous Solution. The Journal of Physical Chemistry B, 119 (9). 3755-3761 doi:10.1021/jp512414f
Plain TextKasavajhala, Koushik, Bikkina, Swetha, Patil, Indrajit, MacKerell, Alexander D., Priyakumar, U. Deva (2015) Dispersion Interactions between Urea and Nucleobases Contribute to the Destabilization of RNA by Urea in Aqueous Solution. The Journal of Physical Chemistry B, 119 (9). 3755-3761 doi:10.1021/jp512414f
In(2015, March) The Journal of Physical Chemistry B Vol. 119 (9) American Chemical Society (ACS)

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Goyal, Siddharth, Chattopadhyay, Aditya, Kasavajhala, Koushik, Priyakumar, U. Deva (2017) Role of Urea–Aromatic Stacking Interactions in Stabilizing the Aromatic Residues of the Protein in Urea-Induced Denatured State. Journal Of The American Chemical Society, 139 (42) 14931-14946 doi:10.1021/jacs.7b05463
Priyakumar, U. Deva, Hyeon, Changbong, Thirumalai, D., MacKerell, Alexander D. (2009) Urea Destabilizes RNA by Forming Stacking Interactions and Multiple Hydrogen Bonds with Nucleic Acid Bases. Journal Of The American Chemical Society, 131 (49) 17759-17761 doi:10.1021/ja905795v
Priyakumar, U. Deva, MacKerell, Alexander D. (2008) Atomic Detail Investigation of the Structure and Dynamics of DNA•RNA Hybrids:  A Molecular Dynamics Study. The Journal of Physical Chemistry B, 112 (5). 1515-1524 doi:10.1021/jp709827m
Jaganade, Tanashree, Chattopadhyay, Aditya, Pazhayam, Nila M., Priyakumar, U. Deva (2019) Energetic, Structural and Dynamic Properties of Nucleobase-Urea Interactions that Aid in Urea Assisted RNA Unfolding. Scientific Reports, 9. doi:10.1038/s41598-019-45010-8
Denning, Elizabeth J., Priyakumar, U. Deva, Nilsson, Lennart, Mackerell, Alexander D. (2011) Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA. Journal of Computational Chemistry, 32 (9). 1929-1943 doi:10.1002/jcc.21777
Priyakumar, U. Deva, MacKerell, Alexander D. (2006) Computational Approaches for Investigating Base Flipping in Oligonucleotides. Chemical Reviews, 106 (2) 489-505 doi:10.1021/cr040475z
Priyakumar, U. Deva, MacKerell, Alexander D. (2010) Role of the Adenine Ligand on the Stabilization of the Secondary and Tertiary Interactions in the Adenine Riboswitch. Journal of Molecular Biology, 396 (5). 1422-1438 doi:10.1016/j.jmb.2009.12.024
Raghunathan, Shampa, Yadav, Komal, Rojisha, V. C., Jaganade, Tanashree, Prathyusha, V., Bikkina, Swetha, Lourderaj, Upakarasamy, Priyakumar, U. Deva (2020) Transition between [R]- and [S]-stereoisomers without bond breaking. Physical Chemistry Chemical Physics, 22 (26) 14983-14991 doi:10.1039/d0cp02918a
Rai, Sandhya, Ehara, Masahiro, Deva Priyakumar, U. (2015) Nucleobases tagged to gold nanoclusters cause a mechanistic crossover in the oxidation of CO. Physical Chemistry Chemical Physics, 17 (37). 24275-24281 doi:10.1039/c5cp04273a
Priyakumar, U. Deva, MacKerell, Alexander D. (2006) NMR Imino Proton Exchange Experiments on Duplex DNA Primarily Monitor the Opening of Purine Bases. Journal Of The American Chemical Society, 128 (3) 678-679 doi:10.1021/ja056445a
Suresh, Gorle, Priyakumar, U. Deva (2013) Structures, Dynamics, and Stabilities of Fully Modified Locked Nucleic Acid (β-d-LNA and α-l-LNA) Duplexes in Comparison to Pure DNA and RNA Duplexes. The Journal of Physical Chemistry B, 117 (18). 5556-5564 doi:10.1021/jp4016068
 
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