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Elmer, Sidney P., Park, Sanghyun, Pande, Vijay S. (2005) Foldamer dynamics expressed via Markov state models. II. State space decomposition. The Journal of Chemical Physics, 123 (11). 114903pp. doi:10.1063/1.2008230

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Reference TypeJournal (article/letter/editorial)
TitleFoldamer dynamics expressed via Markov state models. II. State space decomposition
JournalThe Journal of Chemical Physics
AuthorsElmer, Sidney P.Author
Park, SanghyunAuthor
Pande, Vijay S.Author
Year2005 (September 15)Volume123
Issue11
PublisherAIP Publishing
DOIdoi:10.1063/1.2008230Search in ResearchGate
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Mindat Ref. ID2296989Long-form Identifiermindat:1:5:2296989:7
GUID0
Full ReferenceElmer, Sidney P., Park, Sanghyun, Pande, Vijay S. (2005) Foldamer dynamics expressed via Markov state models. II. State space decomposition. The Journal of Chemical Physics, 123 (11). 114903pp. doi:10.1063/1.2008230
Plain TextElmer, Sidney P., Park, Sanghyun, Pande, Vijay S. (2005) Foldamer dynamics expressed via Markov state models. II. State space decomposition. The Journal of Chemical Physics, 123 (11). 114903pp. doi:10.1063/1.2008230
In(2005, September) The Journal of Chemical Physics Vol. 123 (11) AIP Publishing

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Elmer, Sidney P., Park, Sanghyun, Pande, Vijay S. (2005) Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water. The Journal of Chemical Physics, 123 (11). 114902pp. doi:10.1063/1.2001648
Park, Sanghyun, Pande, Vijay S. (2006) Validation of Markov state models using Shannon’s entropy. The Journal of Chemical Physics, 124 (5). 54118pp. doi:10.1063/1.2166393
Elmer, Sidney P., Pande, Vijay S. (2004) Foldamer simulations: Novel computational methods and applications to poly-phenylacetylene oligomers. The Journal of Chemical Physics, 121 (24). 12760pp. doi:10.1063/1.1812272
Singhal, Nina, Pande, Vijay S. (2005) Error analysis and efficient sampling in Markovian state models for molecular dynamics. The Journal of Chemical Physics, 123 (20). 204909pp. doi:10.1063/1.2116947
Sinitskiy, Anton V., Pande, Vijay S. (2018) Theoretical restrictions on longest implicit time scales in Markov state models of biomolecular dynamics. The Journal of Chemical Physics, 148 (4). 44111pp. doi:10.1063/1.5005058
Elmer, Sidney P., Pande, Vijay S. (2005) Length dependent folding kinetics of phenylacetylene oligomers: Structural characterization of a kinetic trap. The Journal of Chemical Physics, 122 (12). 124908pp. doi:10.1063/1.1867375
England, Jeremy L., Park, Sanghyun, Pande, Vijay S. (2008) Theory for an order-driven disruption of the liquid state in water. The Journal of Chemical Physics, 128 (4). 44503pp. doi:10.1063/1.2823129
Husic, Brooke E., McGibbon, Robert T., Sultan, Mohammad M., Pande, Vijay S. (2016) Optimized parameter selection reveals trends in Markov state models for protein folding. The Journal of Chemical Physics, 145 (19). 194103pp. doi:10.1063/1.4967809
Hinrichs, Nina Singhal, Pande, Vijay S. (2007) Calculation of the distribution of eigenvalues and eigenvectors in Markovian state models for molecular dynamics. The Journal of Chemical Physics, 126 (24). 244101pp. doi:10.1063/1.2740261
Bowman, Gregory R., Beauchamp, Kyle A., Boxer, George, Pande, Vijay S. (2009) Progress and challenges in the automated construction of Markov state models for full protein systems. The Journal of Chemical Physics, 131 (12). 124101pp. doi:10.1063/1.3216567
Weber, Jeffrey K., Jack, Robert L., Pande, Vijay S. (2013) Emergence of Glass-like Behavior in Markov State Models of Protein Folding Dynamics. Journal Of The American Chemical Society, 135 (15) 5501-5504 doi:10.1021/ja4002663
 
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